Information for 7-TRAKTAAACA (Motif 4)

G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G A T A C G T C T G A G T A C G C A T G A T C C G T A
p-value:1e-17
log p-value:-3.948e+01
Information Content per bp:1.696
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.42%
Number of Background Sequences with motif541.7
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets50.4 +/- 24.8bp
Average Position of motif in Background49.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TRAKTAAACA
AAAGTAAACA
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TRAKTAAACA
AAAGTAAACA
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TRAKTAAACA--
WWTRTAAACAVG
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A A C G T A C G T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:4
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TRAKTAAACA--
TATGTAAACANG
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:TRAKTAAACA
-AAATAAACA
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TRAKTAAACA--
-AAGTAAACAAA
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TRAKTAAACA---
NCWRWGTAAACANSV
 A C G T A C G T G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2/MA0047.2/Jaspar

Match Rank:8
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TRAKTAAACA
NCTAAGTAAACA
 A C G T A C G T G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:9
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TRAKTAAACA-
WWATRTAAACAN
 A C G T G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A A C G T
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

FOXL1/MA0033.2/Jaspar

Match Rank:10
Score:0.91
Offset:3
Orientation:forward strand
Alignment:TRAKTAAACA
---GTAAACA
 G C A T C T A G C G T A C A T G A G C T G T C A C G T A C G T A G T A C C G T A
A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A