Information for 3-VNCCACGTGGCSV (Motif 3)

T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
Reverse Opposite:
A T G C T A C G T C A G G T A C A G T C C T G A G T A C C T A G A G C T A T C G A T C G T A G C A G T C
p-value:1e-35
log p-value:-8.213e+01
Information Content per bp:1.612
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif15.59%
Number of Background Sequences with motif2088.4
Percentage of Background Sequences with motif4.51%
Average Position of motif in Targets52.6 +/- 20.0bp
Average Position of motif in Background50.0 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
--CCACGTGGNN-
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
--CCACGTGGNN-
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.97
Offset:3
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
---CACGTGGN--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.97
Offset:3
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
---CACGTGNC--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-VNCCACGTGGCSV
NNACCACGTGGT--
A C G T T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
C G A T T C A G T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.97
Offset:3
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
---CACGTGGC--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
---CACGTGDC--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
---CACGTGBN--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T

MAX/MA0058.3/Jaspar

Match Rank:9
Score:0.95
Offset:1
Orientation:forward strand
Alignment:VNCCACGTGGCSV
-ACCACGTGCT--
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:VNCCACGTGGCSV
--TCACGTGACC-
T C A G A T C G T A G C A T G C C T G A A G T C A C T G A G C T A C T G C A T G A G T C A T G C T A C G
A C G T A C G T A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T