Information for 7-GTGTGTCTGGCAGCAC (Motif 19)

A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
Reverse Opposite:
A T C G C G A T A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C T G T C G A A G T C C G T A A T G C C T G A A G T C
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.917
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 17.1bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GTGTGTCTGGCAGCAC
---TGTCTGDCACCT-
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GTGTGTCTGGCAGCAC
--CTGTCTGTCACCT-
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTGTGTCTGGCAGCAC
---GGTCTGGCAT---
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTGTGTCTGGCAGCAC
--CTGTCTGG------
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTGTGTCTGGCAGCAC
VBSYGTCTGG------
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGTCTGGCAGCAC
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTGTGTCTGGCAGCAC
--BTGABTGACAGS--
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GTGTGTCTGGCAGCAC-
-----SCTGTCARCACC
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTGTGTCTGGCAGCAC
--TWGTCTGV------
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTGTGTCTGGCAGCAC
--NTGATTGACAGN--
 A C T G A G C T A T C G A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A T G C
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T