Information for 2-CNYTAAGYAAACA (Motif 2)

A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G T A C T A G C T A G T C A G
p-value:1e-43
log p-value:-1.000e+02
Information Content per bp:1.685
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif13.16%
Number of Background Sequences with motif1202.5
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets54.8 +/- 24.7bp
Average Position of motif in Background48.9 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.95
Offset:3
Orientation:forward strand
Alignment:CNYTAAGYAAACA
---AAAGTAAACA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.95
Offset:3
Orientation:forward strand
Alignment:CNYTAAGYAAACA
---AAAGTAAACA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:3
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:CNYTAAGYAAACA
---WAAGTAAAYA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:CNYTAAGYAAACA----
--CAAAGTAAACANNNN
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:CNYTAAGYAAACA
-NCTAAGTAAACA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXC2/MA0846.1/Jaspar

Match Rank:6
Score:0.92
Offset:3
Orientation:forward strand
Alignment:CNYTAAGYAAACA--
---TAAGTAAACAAA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:CNYTAAGYAAACA---
-NCWRWGTAAACANSV
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CNYTAAGYAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.90
Offset:4
Orientation:reverse strand
Alignment:CNYTAAGYAAACA
----AAATAAACA
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.89
Offset:3
Orientation:forward strand
Alignment:CNYTAAGYAAACA-
---TATGTAAATAT
 A G T C G A T C G A T C C G A T T C G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A A C G T
A C G T A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T