Information for 10-TGTCTGTAACAGA (Motif 9)

A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
Reverse Opposite:
G A C T A T G C C G A T A C T G A C G T A C G T G C T A G T A C G C T A C T A G C T G A T A G C G T C A
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.640
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif290.5
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets50.6 +/- 25.1bp
Average Position of motif in Background52.0 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGTCTGTAACAGA-
----TGGAACAGMA
 A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A A C G T
A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGTCTGTAACAGA
-GNCTATAAAAGG
 A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGTAACAGA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGTCTGTAACAGA
TGTCTGDCACCT-
 A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGTAACAGA
CTGTCTGTCACCT-
 A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGTAACAGA
TWGTCTGV------
 A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGTAACAGA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTCTGTAACAGA----
CTGNNNNNNNCAGATAAG
 A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A A C G T A C G T A C G T A C G T
T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGTAACAGA
CTGTCTGG------
 A C G T A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGTCTGTAACAGA
--AATGTATCAAT
 A C G T A T C G G A C T G A T C C G A T C A T G C G A T T G C A T G C A T G A C C G T A T A C G C T G A
A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T