Information for 7-CAGGGCCAAATTC (Motif 7)

G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
Reverse Opposite:
T C A G C G T A G T C A A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A G C T C A T G
p-value:1e-10
log p-value:-2.424e+01
Information Content per bp:1.803
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.3 +/- 26.8bp
Average Position of motif in Background72.2 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGGGCCAAATTC
-CGTGCCAAG---
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAGGGCCAAATTC
---TGCCAA----
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGGGCCAAATTC----
-GGGGTCAAAGTCCAAT
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGGGCCAAATTC
-GGTGCCAAGT--
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGGCCAAATTC
CAAGGHCANV---
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAGGGCCAAATTC
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGGGCCAAATTC--
CANAGNNCAAAGTCCA
 A C G T G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGGGCCAAATTC--
AGAGTCCAAAGTCCA
 G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGGGCCAAATTC
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGGGCCAAATTC
NTCAAGGTCA-----
 A C G T A C G T G T A C C T G A C T A G C T A G A C T G G T A C A G T C C G T A C G T A T C G A A C G T A C G T A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T