Information for 7-GADGMATCACAAA (Motif 4)

A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A
Reverse Opposite:
A C G T C G A T A G C T A C T G A G C T A T C G G T C A A C G T A C G T A G T C G A C T A C G T A T G C
p-value:1e-12
log p-value:-2.838e+01
Information Content per bp:1.809
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.2 +/- 27.5bp
Average Position of motif in Background50.7 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GADGMATCACAAA-------
GAAGTANCACGAATNMRAGT
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GADGMATCACAAA---
-AAAAATAACAAACGG
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T A C G T A C G T
A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0142.1_Jundm2_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GADGMATCACAAA
ATTGATGAGTCACCAA
 A C G T A C G T A C G T A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A

JUND/MA0491.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GADGMATCACAAA
NATGAGTCACN--
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GADGMATCACAAA
NATGAGTCANN--
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A
T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GADGMATCACAAA----
--ACCGTGACTAATTNN
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GADGMATCACAAA-
ATTTGCATAACAAAG
 A C G T A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0108.1_Atf1_2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GADGMATCACAAA----
---GAATGACGAATAAC
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GADGMATCACAAA----
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

FOSL1/MA0477.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GADGMATCACAAA
NATGAGTCACC--
 A T C G C G T A C G T A A C T G G T A C C G T A A C G T A T G C C T G A A G T C C T G A C G T A C G T A
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T