Information for 11-GCWGGCTAGACTG (Motif 19)

A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C G T A G T C G A C T C T G A A C T G A G T C A G T C C G A T A C T G A G T C
p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.901
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.5 +/- 22.3bp
Average Position of motif in Background68.6 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCWGGCTAGACTG-
GTCATGCHTGRCTGS
 A C G T A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCWGGCTAGACTG
--TGTCTAGACG-
 A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCWGGCTAGACTG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCWGGCTAGACTG---
-GGGGCTYGKCTGGGA
 A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T
A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCWGGCTAGACTG
-----CCAGACAG
 A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCWGGCTAGACTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCWGGCTAGACTG-----
GTCACGCTTGGCTGCNCNN
 A C G T A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCWGGCTAGACTG
-GTGGCGTGACNG
 A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G
A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

PAX1/MA0779.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCWGGCTAGACTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCWGGCTAGACTG-----
---GGNGCGNCTGTTNNN
 A C T G A G T C C G A T A C T G A C T G A G T C A G C T C G T A A C T G C G T A A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T