Information for 10-STCCCTSCAGGGA (Motif 11)

A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
Reverse Opposite:
A C G T G T A C A G T C A T G C A G C T A T C G A T C G G T C A C T A G A C T G A C T G T C G A T A G C
p-value:1e-10
log p-value:-2.521e+01
Information Content per bp:1.738
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif66.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets48.5 +/- 32.6bp
Average Position of motif in Background51.9 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-STCCCTSCAGGGA-
ATTCCCTGAGGGGAA
 A C G T A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A A C G T
C G T A C G A T G A C T A T G C G T A C A G T C A G C T A T C G T C G A C T A G A C T G T A C G C T A G C G T A C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--STCCCTSCAGGGA
GGCCYCCTGCTGDGH
 A C G T A C G T A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:STCCCTSCAGGGA
CCCCCTGCTGTG-
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-STCCCTSCAGGGA-
ATTGCCTGAGGCGAA
 A C G T A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A A C G T
C G T A G C A T G A C T A T C G G T A C A G T C A G C T A T C G T C G A C T A G A C T G T A G C C T A G G C T A C G T A

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--STCCCTSCAGGGA
NCTTCCCGCCC----
 A C G T A C G T A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:STCCCTSCAGGGA
-TGCCCCAGGGCA
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:STCCCTSCAGGGA
-TGCCCCCGGGCA
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:STCCCTSCAGGGA
TGCCCTGAGGGCA
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2B/MA0811.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:STCCCTSCAGGGA
-TGCCCCAGGGCA
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:STCCCTSCAGGGA
TGCCCTGAGGGCA
 A T C G A G C T G T A C A G T C G A T C C A G T A T G C A T G C T C G A T A C G C T A G A C T G C G T A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A