Information for 3-GCGCCTCCWGGGGTAG (Motif 5)

A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
Reverse Opposite:
A G T C G A C T T C G A A G T C A G T C G T A C A G T C G C A T C T A G A C T G C T G A A C T G A C T G A T G C A T C G A G T C
p-value:1e-11
log p-value:-2.742e+01
Information Content per bp:1.796
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.3 +/- 20.5bp
Average Position of motif in Background51.3 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
-CCCCCCCGGGGGNN-
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
NCCCCCCCGGGGGGN-
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
ACCCCCCCGGGGGGN-
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCTCCWGGGGTAG
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGCCTCCWGGGGTAG
--GTCCCCAGGGGA--
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
CCCCCTGCTGTG----
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCGCCTCCWGGGGTAG
GGCCYCCTGCTGDGH---
 A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
NCGCAGCGGGGGGTC-
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GCGCCTCCWGGGGTAG
NNNGGGGCGCCCCCNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCGCCTCCWGGGGTAG
NCNCAGCGGGGGGTC-
 A C T G A T G C A T C G A G T C A G T C A G C T A G T C A G T C C G A T A C T G A C T G C T A G A C T G A C G T C T G A A C T G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T