Information for 8-VCCATTTCAAATG (Motif 9)

T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
Reverse Opposite:
A T G C C G T A A C G T A C G T A G C T A T C G C G T A C T G A C G T A C A G T A C T G T A C G A C T G
p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.801
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.7 +/- 24.9bp
Average Position of motif in Background47.5 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:VCCATTTCAAATG
-CGGTTTCAAA--
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:VCCATTTCAAATG
---NATTCAAAT-
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:VCCATTTCAAATG
---ACATCAAAGG
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---VCCATTTCAAATG
TAAGCCACTTGAATTT
 A C G T A C G T A C G T T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:VCCATTTCAAATG-----
-NANTTTCAAGTGGTTAN
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:VCCATTTCAAATG--
ACCGTGACTAATTNN
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:VCCATTTCAAATG
---ACWTCAAAGG
 T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---VCCATTTCAAATG
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---VCCATTTCAAATG
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----VCCATTTCAAATG
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T A C G T T A G C A T G C A G T C G T C A A C G T G A C T A C G T A T G C C T G A C G T A C G T A A C G T A T C G
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T