Information for 6-GCAAAGGCWBRGC (Motif 4)

C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
Reverse Opposite:
T C A G G T A C G A C T T A G C C G T A T A C G A G T C G T A C A C G T A C G T A C G T A C T G A G T C
p-value:1e-14
log p-value:-3.277e+01
Information Content per bp:1.722
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif125.5
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets51.0 +/- 24.0bp
Average Position of motif in Background50.2 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGCWBRGC
RACAAWGG------
 A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGCWBRGC
AACAAAGG------
 A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGCWBRGC
AAAACAAAGG------
 A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGCWBRGC
GGAACAAAGR------
 A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGCWBRGC
VRRACAAWGG------
 A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGCWBRGC
ACATCAAAGGNA----
 A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAAAGGCWBRGC---
-CAAAGGCGTGGCCAG
 C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------GCAAAGGCWBRGC
AGAAGAACAAAGGACTA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAGGCWBRGC
ATATGCAAATNNN----
 A C G T A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGCWBRGC
ACATCAAAGG------
 A C G T A C G T A C G T C T A G G T A C C G T A C G T A G T C A A C T G C T A G A G T C C G A T A T C G C T G A A C T G A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T