Information for 19-RAGAKGRTRCTGG (Motif 29)

C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G A G C T T C G A A G C T A G T C G T A C A C G T A G T C A C G T A G C T
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.848
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets34.6 +/- 17.2bp
Average Position of motif in Background54.1 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RAGAKGRTRCTGG--
AAGGKGRCGCAGGCA
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RAGAKGRTRCTGG---
-AGATGCTRCTRCCHT
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RAGAKGRTRCTGG-----
---RGSMTBCTGGGAAAT
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:RAGAKGRTRCTGG---
------WDNCTGGGCA
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:RAGAKGRTRCTGG--
TAGAANVTTCTAGAA
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----RAGAKGRTRCTGG
AAGGCCAGATGGTCCGG-
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G A C G T

HSF4/MA0771.1/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:RAGAKGRTRCTGG--
--GAANNTTCTAGAA
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

POL002.1_INR/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:RAGAKGRTRCTGG
-----NNNANTGA
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------RAGAKGRTRCTGG
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.48
Offset:6
Orientation:forward strand
Alignment:RAGAKGRTRCTGG---
------GGTCTGGCAT
 C T G A C G T A A C T G C G T A A C T G A C T G C T G A A G C T C T G A A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T