Information for 18-GCTCCCTCTGACCAAT (Motif 28)

A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
Reverse Opposite:
G T C A A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G C G T A A C T G A C T G C T A G C T G A A C T G A G T C
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.917
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.8 +/- 15.4bp
Average Position of motif in Background86.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCTCCCTCTGACCAAT--
------ACTAGCCAATCA
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NR2C2/MA0504.1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTCCCTCTGACCAAT
-TGACCTCTGACCCCN
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCTCCCTCTGACCAAT---
----ACCGTGACTAATTNN
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:9
Orientation:forward strand
Alignment:GCTCCCTCTGACCAAT---
---------AGCCAATCGG
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCTCCCTCTGACCAAT-
----CNNTTGACCTTTG
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCTCCCTCTGACCAAT---
----AAATGGACCAATCAG
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCTCCCTCTGACCAAT
GCTCCG----------
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCTCCCTCTGACCAAT
-CGCCCCCTGACA---
 A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCTCCCTCTGACCAAT
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T A C G T A C G T A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCTCCCTCTGACCAAT
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C T G A G T C A G C T A G T C A G T C A G T C A C G T G T A C G C A T A C T G C G T A A G T C G T A C C G T A C G T A A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T