Information for 7-AGCCAATCGA (Motif 11)

T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
Reverse Opposite:
G C A T A G T C T A C G C G T A C G A T C G A T C A T G T A C G T A G C A G C T
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.698
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif322.5
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets50.0 +/- 25.5bp
Average Position of motif in Background51.3 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AGCCAATCGA
AGCCAATCGG
 T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATCGA
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGCCAATCGA
TGCCAA----
 T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATCGA
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGA
CGTGCCAAG---
 A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGA-----
CGACCCAATCAACGGTG
 A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCGA
BCAGACWA----
 A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGA
GGTGCCAAGT--
 A C G T A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCCAATCGA
--CCAATCAA
 T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATCGA
CAGCC------
 A C G T T C G A A T C G A T G C G T A C C G T A C G T A G C A T A T G C T C A G C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T