Information for 9-TGADACAAWGGCATCA (Motif 7)

C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
Reverse Opposite:
A C G T A C T G C T G A A C G T A C T G A G T C G T A C C G T A A C G T A C G T A T C G A C G T G A C T A C G T A T G C G C T A
p-value:1e-14
log p-value:-3.312e+01
Information Content per bp:1.744
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 19.7bp
Average Position of motif in Background15.4 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
---AACAAAGG-----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGADACAAWGGCATCA
--RAACAATGGN----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
-AAAACAATGG-----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
----ACAAAGGNBCCT
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
-AAAACAAAGG-----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGADACAAWGGCATCA
CTCACACAATGGCGC--
 A C G T C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
-VRAACAATGG-----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
---RACAAWGG-----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGADACAAWGGCATCA
AAACAGACAAAGGAAT--
 A C G T A C G T C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGADACAAWGGCATCA
--GAACAATGGN----
 C A G T A T C G C G T A C T A G G T C A A T G C C G T A T G C A C G A T A C T G A C T G A G T C G T C A A G C T A G T C G T C A
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T