Information for 19-ATTGCCATAGTTA (Motif 23)

C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A
Reverse Opposite:
A C G T C G T A C G T A T A G C G A C T C G T A C G A T T A C G C T A G G T A C C T G A G C T A G C A T
p-value:1e-4
log p-value:-1.084e+01
Information Content per bp:1.697
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif53.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets55.0 +/- 32.0bp
Average Position of motif in Background50.2 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ATTGCCATAGTTA--
-TTGCCATGGCAACC
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATTGCCATAGTTA--
-TTGCCATGGCAACN
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX4/MA0799.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATTGCCATAGTTA--
CGTTGCCATGGCAACN
 A C G T C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATTGCCATAGTTA----
--TACCCTAGTTACCGA
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

RFX3/MA0798.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATTGCCATAGTTA--
CGTTGCCATGGCAACG
 A C G T C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATTGCCATAGTTA--
CGTTGCCATGGCAACG
 A C G T C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATTGCCATAGTTA--
CGTTGCCATGGCAACG
 A C G T C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATTGCCATAGTTA--
GTTGCCATGGCAACM
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATTGCCATAGTTA-
GTTGCCATGGNAAC
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATTGCCATAGTTA
----CCATTGTTC
 C G T A C G A T A G C T A C T G A G T C A G T C C G T A C G A T C T G A A C T G G C A T G A C T C G T A
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C