Information for 6-CCCAGAAMTTGTBTGT (Motif 7)

A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T
Reverse Opposite:
T G C A A T G C C G T A T C A G C G T A A T G C C G T A T C G A A C T G A C G T C G A T T A G C C G A T T A C G C T A G A T C G
p-value:1e-11
log p-value:-2.727e+01
Information Content per bp:1.710
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif31.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets44.6 +/- 21.8bp
Average Position of motif in Background48.3 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT--
-GGAAAAATTGTTAGGAA
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T
A C G T T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT--
----AAAATTGTTATGAA
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT
--------CTGTCTGG
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT
------VBSYGTCTGG
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT
--------TWGTCTGV
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCCAGAAMTTGTBTGT-----
----NNTNNTGTCTGGNNTNG
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCCAGAAMTTGTBTGT----
----NNNNTTGTGTGCTTNN
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Sox11/MA0869.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGAAMTTGTBTGT
AACACTGAAATTGTT---
 A C G T A C G T A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCCAGAAMTTGTBTGT----
----NNGCGTGTGTGCNGCN
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0177.1_Sox7_2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCCAGAAMTTGTBTGT-------
-GTGCTAATTGTGTGTGTACGCT
 A T G C G A T C A T G C G C T A A C T G C G T A G T C A G T A C A C G T A C G T A T C G C G A T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G C G A T T A C G A T G C C G A T G T C A C G T A G C A T G C A T T C A G G C A T T A C G G A C T T A C G G C A T T C A G A C G T C T G A G A T C A C T G T A G C A G C T