Information for 3-YGCCMYCTRGTGG (Motif 2)

A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G
Reverse Opposite:
A T G C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C A T G A C T G C T A G T G A C T C G A
p-value:1e-30
log p-value:-7.029e+01
Information Content per bp:1.732
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.48%
Number of Background Sequences with motif79.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets49.5 +/- 21.7bp
Average Position of motif in Background50.0 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----YGCCMYCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---YGCCMYCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------YGCCMYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:YGCCMYCTRGTGG--
-CCCCCCCGGGGGNN
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T
A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGCCMYCTRGTGG--
CCCCCCCGGGGGGGT
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:YGCCMYCTRGTGG--
---------GTGGAT
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YGCCMYCTRGTGG--
CCCCCCCGGGGGGGT
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

Mycn/MA0104.3/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:YGCCMYCTRGTGG-
------CACGTGGC
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YGCCMYCTRGTGG-
--CCCCCTGCTGTG
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YGCCMYCTRGTGG--
GGCCYCCTGCTGDGH
 A G C T A C T G G A T C A G T C G T A C A G T C G T A C C G A T C T A G A T C G A C G T A C T G A T C G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C