Information for 9-CCGCAACAGGGCC (Motif 12)

A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C A C G T A C T G A G C T A C G T A C T G A G T C C T A G C T A G
p-value:1e-8
log p-value:-1.931e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 29.2bp
Average Position of motif in Background85.2 +/- 7.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCGCAACAGGGCC
ATGCAACAGGTGG
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGCAACAGGGCC--
GAGCAACAGGTGGTT
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGCAACAGGGCC
-CACAGCAGGGGG
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGCAACAGGGCC--
---CAAGATGGCGGC
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCGCAACAGGGCC--
DCHCAGCAGGRGGCC
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCGCAACAGGGCC
AAACCGCAA-------
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCGCAACAGGGCC
----CACAGN---
 A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCGCAACAGGGCC
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCGCAACAGGGCC
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCGCAACAGGGCC---
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C G T C A C T G A A G T C C G T A A C T G A C T G A C T G G T A C A G T C A C G T A C G T A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G