Information for 7-GGAATTGCTCTGAAGA (Motif 10)

A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
Reverse Opposite:
C G A T A T G C C G A T C A G T A G T C C G T A A C T G C G T A C A T G T A G C C G T A C T G A C G A T C A G T A T G C G T A C
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.728
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif28.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets53.7 +/- 21.0bp
Average Position of motif in Background54.4 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAATTGCTCTGAAGA
-TAATTGTTCTAAAC-
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGAATTGCTCTGAAGA---
--NNTTCCTTTGATCTNNA
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAATTGCTCTGAAGA---
--NNTTCCTTTGATCTANA
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGAATTGCTCTGAAGA
AAAATTGTTATGAA--
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A A C G T A C G T

Stat6/MA0520.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGAATTGCTCTGAAGA
-CATTTCCTGAGAAAT
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
A C G T A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAATTGCTCTGAAGA-
--CTTTGTTATGCAAAT
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGAATTGCTCTGAAGA
GGAAAAATTGTTAGGAA--
 A C G T A C G T A C G T A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGAATTGCTCTGAAGA-
--CATTGTTATGCAAAT
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGAATTGCTCTGAAGA-
NNCTTTGTTTTGNTNNN
 A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAATTGCTCTGAAGA
GTATCTATTGTTCTTTA--
 A C G T A C G T A C G T A C T G T A C G G T C A C G T A A G C T A C G T A C T G G T A C A C G T A G T C G C A T A C T G G T C A C G T A T A C G C G T A
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A A C G T A C G T