Information for 6-TGAGATYTRRGTT (Motif 13)

A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T
Reverse Opposite:
G T C A C G T A T A G C G A T C G A C T C G T A C T A G G T C A G C A T A G T C A G C T G T A C T C G A
p-value:1e-10
log p-value:-2.391e+01
Information Content per bp:1.633
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif557.0
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets49.5 +/- 22.5bp
Average Position of motif in Background50.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGAGATYTRRGTT
-----TGTCGGTT
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGAGATYTRRGTT--------
----NTTTTAGTTAACNNAGN
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGAGATYTRRGTT
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T A C G T A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGAGATYTRRGTT--
-TATAAGTAGGTCAA
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T
A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

T/MA0009.2/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGAGATYTRRGTT---
TCACACCTAGGTGTGA
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T
G A C T T G A C C T G A A G T C C T G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

PB0081.1_Tcf1_1/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TGAGATYTRRGTT--------
----NNNTTAGTTAACTNANN
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TGAGATYTRRGTT-----
--AATNTTAAGTGGNTNN
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:forward strand
Alignment:TGAGATYTRRGTT-
----AAYTAGGTCA
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TGAGATYTRRGTT-----
-TNNTCCTTTGTTCTNNT
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:TGAGATYTRRGTT---
------TTAAGTGCTT
 A G C T C A T G T C G A T C A G C G T A C A G T G A T C G C A T C T G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T