Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-425 | -9.795e+02 | 0.0000 | 768.0 | 85.24% | 7620.2 | 17.76% | motif file (matrix) |
svg |
2 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-400 | -9.221e+02 | 0.0000 | 794.0 | 88.12% | 9214.6 | 21.47% | motif file (matrix) |
svg |
3 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-361 | -8.315e+02 | 0.0000 | 720.0 | 79.91% | 7616.8 | 17.75% | motif file (matrix) |
svg |
4 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-360 | -8.293e+02 | 0.0000 | 823.0 | 91.34% | 11739.3 | 27.36% | motif file (matrix) |
svg |
5 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-269 | -6.202e+02 | 0.0000 | 557.0 | 61.82% | 5243.7 | 12.22% | motif file (matrix) |
svg |
6 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-256 | -5.897e+02 | 0.0000 | 539.0 | 59.82% | 5106.3 | 11.90% | motif file (matrix) |
svg |
7 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-208 | -4.802e+02 | 0.0000 | 414.0 | 45.95% | 3324.6 | 7.75% | motif file (matrix) |
svg |
8 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-206 | -4.765e+02 | 0.0000 | 531.0 | 58.93% | 6225.3 | 14.51% | motif file (matrix) |
svg |
9 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-203 | -4.681e+02 | 0.0000 | 377.0 | 41.84% | 2698.7 | 6.29% | motif file (matrix) |
svg |
10 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-200 | -4.613e+02 | 0.0000 | 457.0 | 50.72% | 4473.4 | 10.43% | motif file (matrix) |
svg |
11 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-194 | -4.481e+02 | 0.0000 | 452.0 | 50.17% | 4500.0 | 10.49% | motif file (matrix) |
svg |
12 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-194 | -4.470e+02 | 0.0000 | 435.0 | 48.28% | 4108.7 | 9.58% | motif file (matrix) |
svg |
13 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-180 | -4.151e+02 | 0.0000 | 480.0 | 53.27% | 5629.8 | 13.12% | motif file (matrix) |
svg |
14 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-161 | -3.727e+02 | 0.0000 | 500.0 | 55.49% | 6832.5 | 15.92% | motif file (matrix) |
svg |
15 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-138 | -3.198e+02 | 0.0000 | 421.0 | 46.73% | 5373.6 | 12.52% | motif file (matrix) |
svg |
16 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-115 | -2.648e+02 | 0.0000 | 303.0 | 33.63% | 3152.6 | 7.35% | motif file (matrix) |
svg |
17 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-114 | -2.644e+02 | 0.0000 | 405.0 | 44.95% | 5828.6 | 13.58% | motif file (matrix) |
svg |
18 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-107 | -2.464e+02 | 0.0000 | 726.0 | 80.58% | 19228.4 | 44.81% | motif file (matrix) |
svg |
19 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-61 | -1.410e+02 | 0.0000 | 434.0 | 48.17% | 9811.6 | 22.87% | motif file (matrix) |
svg |
20 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-28 | -6.656e+01 | 0.0000 | 65.0 | 7.21% | 518.7 | 1.21% | motif file (matrix) |
svg |
21 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-23 | -5.342e+01 | 0.0000 | 114.0 | 12.65% | 1859.4 | 4.33% | motif file (matrix) |
svg |
22 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-22 | -5.141e+01 | 0.0000 | 87.0 | 9.66% | 1193.5 | 2.78% | motif file (matrix) |
svg |
23 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-17 | -3.988e+01 | 0.0000 | 238.0 | 26.42% | 6545.0 | 15.25% | motif file (matrix) |
svg |
24 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-16 | -3.746e+01 | 0.0000 | 64.0 | 7.10% | 887.1 | 2.07% | motif file (matrix) |
svg |
25 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-16 | -3.689e+01 | 0.0000 | 268.0 | 29.74% | 7887.0 | 18.38% | motif file (matrix) |
svg |
26 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-14 | -3.392e+01 | 0.0000 | 120.0 | 13.32% | 2618.0 | 6.10% | motif file (matrix) |
svg |
27 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-13 | -3.090e+01 | 0.0000 | 65.0 | 7.21% | 1052.8 | 2.45% | motif file (matrix) |
svg |
28 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-12 | -2.935e+01 | 0.0000 | 59.0 | 6.55% | 927.9 | 2.16% | motif file (matrix) |
svg |
29 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-12 | -2.929e+01 | 0.0000 | 62.0 | 6.88% | 1009.4 | 2.35% | motif file (matrix) |
svg |
30 |
| PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-12 | -2.869e+01 | 0.0000 | 85.0 | 9.43% | 1693.6 | 3.95% | motif file (matrix) |
svg |
31 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-11 | -2.755e+01 | 0.0000 | 28.0 | 3.11% | 242.5 | 0.57% | motif file (matrix) |
svg |
32 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-11 | -2.599e+01 | 0.0000 | 30.0 | 3.33% | 298.0 | 0.69% | motif file (matrix) |
svg |
33 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.486e+01 | 0.0000 | 67.0 | 7.44% | 1270.7 | 2.96% | motif file (matrix) |
svg |
34 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-10 | -2.460e+01 | 0.0000 | 142.0 | 15.76% | 3803.2 | 8.86% | motif file (matrix) |
svg |
35 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-10 | -2.447e+01 | 0.0000 | 47.0 | 5.22% | 720.5 | 1.68% | motif file (matrix) |
svg |
36 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-10 | -2.432e+01 | 0.0000 | 61.0 | 6.77% | 1110.2 | 2.59% | motif file (matrix) |
svg |
37 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-9 | -2.089e+01 | 0.0000 | 109.0 | 12.10% | 2812.0 | 6.55% | motif file (matrix) |
svg |
38 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-8 | -2.061e+01 | 0.0000 | 103.0 | 11.43% | 2614.5 | 6.09% | motif file (matrix) |
svg |
39 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-8 | -2.012e+01 | 0.0000 | 103.0 | 11.43% | 2639.1 | 6.15% | motif file (matrix) |
svg |
40 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-8 | -1.993e+01 | 0.0000 | 65.0 | 7.21% | 1371.1 | 3.20% | motif file (matrix) |
svg |
41 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-8 | -1.857e+01 | 0.0000 | 45.0 | 4.99% | 811.5 | 1.89% | motif file (matrix) |
svg |
42 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.837e+01 | 0.0000 | 56.0 | 6.22% | 1145.3 | 2.67% | motif file (matrix) |
svg |
43 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-7 | -1.715e+01 | 0.0000 | 103.0 | 11.43% | 2800.8 | 6.53% | motif file (matrix) |
svg |
44 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.706e+01 | 0.0000 | 77.0 | 8.55% | 1885.0 | 4.39% | motif file (matrix) |
svg |
45 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-7 | -1.700e+01 | 0.0000 | 129.0 | 14.32% | 3779.6 | 8.81% | motif file (matrix) |
svg |
46 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-7 | -1.671e+01 | 0.0000 | 140.0 | 15.54% | 4222.2 | 9.84% | motif file (matrix) |
svg |
47 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.576e+01 | 0.0000 | 46.0 | 5.11% | 927.0 | 2.16% | motif file (matrix) |
svg |
48 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-6 | -1.544e+01 | 0.0000 | 41.0 | 4.55% | 786.3 | 1.83% | motif file (matrix) |
svg |
49 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-6 | -1.517e+01 | 0.0000 | 96.0 | 10.65% | 2661.5 | 6.20% | motif file (matrix) |
svg |
50 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-6 | -1.479e+01 | 0.0000 | 137.0 | 15.21% | 4249.2 | 9.90% | motif file (matrix) |
svg |
51 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-6 | -1.478e+01 | 0.0000 | 184.0 | 20.42% | 6140.1 | 14.31% | motif file (matrix) |
svg |
52 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-5 | -1.297e+01 | 0.0000 | 39.0 | 4.33% | 806.4 | 1.88% | motif file (matrix) |
svg |
53 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-5 | -1.270e+01 | 0.0000 | 188.0 | 20.87% | 6509.8 | 15.17% | motif file (matrix) |
svg |
54 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-5 | -1.242e+01 | 0.0000 | 44.0 | 4.88% | 985.6 | 2.30% | motif file (matrix) |
svg |
55 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-5 | -1.236e+01 | 0.0000 | 52.0 | 5.77% | 1252.3 | 2.92% | motif file (matrix) |
svg |
56 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.170e+01 | 0.0001 | 62.0 | 6.88% | 1632.5 | 3.80% | motif file (matrix) |
svg |
57 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-4 | -1.103e+01 | 0.0001 | 20.0 | 2.22% | 312.6 | 0.73% | motif file (matrix) |
svg |
58 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-4 | -1.079e+01 | 0.0001 | 77.0 | 8.55% | 2235.0 | 5.21% | motif file (matrix) |
svg |
59 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-4 | -1.044e+01 | 0.0002 | 80.0 | 8.88% | 2373.6 | 5.53% | motif file (matrix) |
svg |
60 |
| Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.032e+01 | 0.0002 | 179.0 | 19.87% | 6392.5 | 14.90% | motif file (matrix) |
svg |
61 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.010e+01 | 0.0002 | 40.0 | 4.44% | 951.2 | 2.22% | motif file (matrix) |
svg |
62 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-4 | -1.007e+01 | 0.0002 | 14.0 | 1.55% | 181.2 | 0.42% | motif file (matrix) |
svg |
63 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.474e+00 | 0.0004 | 114.0 | 12.65% | 3788.9 | 8.83% | motif file (matrix) |
svg |
64 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-4 | -9.437e+00 | 0.0005 | 23.0 | 2.55% | 437.1 | 1.02% | motif file (matrix) |
svg |
65 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-4 | -9.305e+00 | 0.0005 | 96.0 | 10.65% | 3083.8 | 7.19% | motif file (matrix) |
svg |
66 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-3 | -8.045e+00 | 0.0018 | 16.0 | 1.78% | 275.1 | 0.64% | motif file (matrix) |
svg |
67 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-3 | -7.901e+00 | 0.0020 | 44.0 | 4.88% | 1203.8 | 2.81% | motif file (matrix) |
svg |
68 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-3 | -7.792e+00 | 0.0022 | 24.0 | 2.66% | 524.0 | 1.22% | motif file (matrix) |
svg |
69 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-3 | -7.746e+00 | 0.0023 | 58.0 | 6.44% | 1732.3 | 4.04% | motif file (matrix) |
svg |
70 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-3 | -7.524e+00 | 0.0028 | 53.0 | 5.88% | 1559.9 | 3.64% | motif file (matrix) |
svg |
71 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.489e+00 | 0.0029 | 82.0 | 9.10% | 2689.8 | 6.27% | motif file (matrix) |
svg |
72 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-3 | -7.299e+00 | 0.0034 | 129.0 | 14.32% | 4642.8 | 10.82% | motif file (matrix) |
svg |
73 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -7.127e+00 | 0.0040 | 91.0 | 10.10% | 3087.6 | 7.20% | motif file (matrix) |
svg |
74 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.706e+00 | 0.0060 | 12.0 | 1.33% | 198.7 | 0.46% | motif file (matrix) |
svg |
75 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -6.698e+00 | 0.0060 | 31.0 | 3.44% | 807.9 | 1.88% | motif file (matrix) |
svg |
76 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.610e+00 | 0.0064 | 211.0 | 23.42% | 8294.5 | 19.33% | motif file (matrix) |
svg |
77 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-2 | -6.535e+00 | 0.0069 | 26.0 | 2.89% | 642.6 | 1.50% | motif file (matrix) |
svg |
78 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-2 | -6.429e+00 | 0.0075 | 19.0 | 2.11% | 415.4 | 0.97% | motif file (matrix) |
svg |
79 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.387e+00 | 0.0078 | 14.0 | 1.55% | 263.2 | 0.61% | motif file (matrix) |
svg |
80 |
| ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.146e+00 | 0.0097 | 57.0 | 6.33% | 1819.3 | 4.24% | motif file (matrix) |
svg |
81 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-2 | -6.007e+00 | 0.0111 | 18.0 | 2.00% | 399.2 | 0.93% | motif file (matrix) |
svg |
82 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.831e+00 | 0.0130 | 21.0 | 2.33% | 505.5 | 1.18% | motif file (matrix) |
svg |
83 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.365e+00 | 0.0205 | 129.0 | 14.32% | 4904.6 | 11.43% | motif file (matrix) |
svg |
84 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.315e+00 | 0.0213 | 21.0 | 2.33% | 529.3 | 1.23% | motif file (matrix) |
svg |
85 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.284e+00 | 0.0217 | 49.0 | 5.44% | 1579.8 | 3.68% | motif file (matrix) |
svg |
86 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -5.170e+00 | 0.0241 | 16.0 | 1.78% | 367.9 | 0.86% | motif file (matrix) |
svg |
87 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-2 | -5.147e+00 | 0.0243 | 112.0 | 12.43% | 4205.7 | 9.80% | motif file (matrix) |
svg |
88 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -5.095e+00 | 0.0254 | 44.0 | 4.88% | 1399.3 | 3.26% | motif file (matrix) |
svg |
89 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -4.935e+00 | 0.0294 | 65.0 | 7.21% | 2257.1 | 5.26% | motif file (matrix) |
svg |
90 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.902e+00 | 0.0301 | 15.0 | 1.66% | 345.8 | 0.81% | motif file (matrix) |
svg |
91 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.794e+00 | 0.0331 | 110.0 | 12.21% | 4171.8 | 9.72% | motif file (matrix) |
svg |