Information for 11-CTGTAWCAAG (Motif 17)

A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T C G A T A C T G G C A T A C G T C G T A A G T C C T G A A C T G
p-value:1e-4
log p-value:-1.034e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif41.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets50.6 +/- 20.9bp
Average Position of motif in Background44.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGTAWCAAG
AATGTATCAAT
 A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAWCAAG----
NNNGTAACTANGNNA
 A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGTAWCAAG
ACTGAAACCA-
 A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTGTAWCAAG
TGCTGAGTCA--
 A C G T A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
C G A T T A C G T G A C G A C T C A T G C G T A T A C G A C G T G T A C C T G A A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGTAWCAAG
-TGACTCA--
 A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGTAWCAAG-
-GTTAACTAGN
 A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTGTAWCAAG----
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTGTAWCAAG--------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CTGTAWCAAG-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTAWCAAG
CCATATATGG
 A G T C A G C T A C T G C G A T C G T A C G T A A G T C C G T A C T G A A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G