Information for 5-CCYGGGCATCCTGCCA (Motif 11)

G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G T A G C C T G A C T A G C T A G C G T A C A G T A C T G A G T C A G T C G A T C C T G A A T C G C A T G
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.795
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.5 +/- 20.8bp
Average Position of motif in Background57.7 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CCYGGGCATCCTGCCA-
-CTTGGCANNNTGCCAA
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CCYGGGCATCCTGCCA-
---TGGCAGNCTGCCAG
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CCYGGGCATCCTGCCA
--TTGGCATGGTGCCA
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A
A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:CCYGGGCATCCTGCCA-
---------CTTGGCAA
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.58
Offset:11
Orientation:reverse strand
Alignment:CCYGGGCATCCTGCCA-
-----------TGCCAA
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.57
Offset:9
Orientation:forward strand
Alignment:CCYGGGCATCCTGCCA--
---------CGTGCCAAG
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.56
Offset:9
Orientation:forward strand
Alignment:CCYGGGCATCCTGCCA---
---------GGTGCCAAGT
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCYGGGCATCCTGCCA
NGTGGGCAT-------
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.54
Offset:10
Orientation:forward strand
Alignment:CCYGGGCATCCTGCCA---
----------ATGCCAACC
 G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCYGGGCATCCTGCCA
WDNCTGGGCA--------
 A C G T A C G T G A T C A T G C A G C T C A T G A C T G A C T G G T A C G T C A C G A T A G T C A G T C A G C T A T C G A G T C A G T C C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T