Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-383 | -8.832e+02 | 0.0000 | 742.0 | 83.28% | 7869.7 | 18.51% | motif file (matrix) |
svg |
2 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-371 | -8.556e+02 | 0.0000 | 774.0 | 86.87% | 9380.5 | 22.06% | motif file (matrix) |
svg |
3 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-348 | -8.022e+02 | 0.0000 | 703.0 | 78.90% | 7480.1 | 17.59% | motif file (matrix) |
svg |
4 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-340 | -7.834e+02 | 0.0000 | 806.0 | 90.46% | 11798.4 | 27.75% | motif file (matrix) |
svg |
5 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-228 | -5.250e+02 | 0.0000 | 406.0 | 45.57% | 2814.1 | 6.62% | motif file (matrix) |
svg |
6 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-227 | -5.240e+02 | 0.0000 | 554.0 | 62.18% | 6305.1 | 14.83% | motif file (matrix) |
svg |
7 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-221 | -5.107e+02 | 0.0000 | 511.0 | 57.35% | 5294.6 | 12.45% | motif file (matrix) |
svg |
8 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-216 | -4.996e+02 | 0.0000 | 496.0 | 55.67% | 5035.6 | 11.84% | motif file (matrix) |
svg |
9 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-181 | -4.190e+02 | 0.0000 | 523.0 | 58.70% | 6848.6 | 16.11% | motif file (matrix) |
svg |
10 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-171 | -3.943e+02 | 0.0000 | 419.0 | 47.03% | 4343.0 | 10.22% | motif file (matrix) |
svg |
11 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-163 | -3.764e+02 | 0.0000 | 367.0 | 41.19% | 3339.7 | 7.86% | motif file (matrix) |
svg |
12 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-162 | -3.740e+02 | 0.0000 | 411.0 | 46.13% | 4391.7 | 10.33% | motif file (matrix) |
svg |
13 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-149 | -3.440e+02 | 0.0000 | 432.0 | 48.48% | 5342.9 | 12.57% | motif file (matrix) |
svg |
14 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-148 | -3.415e+02 | 0.0000 | 382.0 | 42.87% | 4081.6 | 9.60% | motif file (matrix) |
svg |
15 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-113 | -2.604e+02 | 0.0000 | 378.0 | 42.42% | 5147.5 | 12.11% | motif file (matrix) |
svg |
16 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-108 | -2.487e+02 | 0.0000 | 287.0 | 32.21% | 2998.6 | 7.05% | motif file (matrix) |
svg |
17 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-107 | -2.479e+02 | 0.0000 | 386.0 | 43.32% | 5594.2 | 13.16% | motif file (matrix) |
svg |
18 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-103 | -2.388e+02 | 0.0000 | 700.0 | 78.56% | 18265.1 | 42.96% | motif file (matrix) |
svg |
19 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-58 | -1.353e+02 | 0.0000 | 423.0 | 47.47% | 9624.4 | 22.64% | motif file (matrix) |
svg |
20 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-33 | -7.628e+01 | 0.0000 | 125.0 | 14.03% | 1683.5 | 3.96% | motif file (matrix) |
svg |
21 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-33 | -7.624e+01 | 0.0000 | 69.0 | 7.74% | 501.3 | 1.18% | motif file (matrix) |
svg |
22 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-20 | -4.812e+01 | 0.0000 | 71.0 | 7.97% | 870.3 | 2.05% | motif file (matrix) |
svg |
23 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-20 | -4.666e+01 | 0.0000 | 278.0 | 31.20% | 7736.5 | 18.20% | motif file (matrix) |
svg |
24 |
| PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-13 | -3.056e+01 | 0.0000 | 82.0 | 9.20% | 1548.6 | 3.64% | motif file (matrix) |
svg |
25 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-13 | -3.034e+01 | 0.0000 | 222.0 | 24.92% | 6505.5 | 15.30% | motif file (matrix) |
svg |
26 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-10 | -2.378e+01 | 0.0000 | 150.0 | 16.84% | 4154.7 | 9.77% | motif file (matrix) |
svg |
27 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-9 | -2.296e+01 | 0.0000 | 57.0 | 6.40% | 1035.2 | 2.43% | motif file (matrix) |
svg |
28 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-9 | -2.206e+01 | 0.0000 | 204.0 | 22.90% | 6362.7 | 14.97% | motif file (matrix) |
svg |
29 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-9 | -2.202e+01 | 0.0000 | 99.0 | 11.11% | 2413.1 | 5.68% | motif file (matrix) |
svg |
30 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-9 | -2.145e+01 | 0.0000 | 108.0 | 12.12% | 2754.8 | 6.48% | motif file (matrix) |
svg |
31 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-9 | -2.137e+01 | 0.0000 | 63.0 | 7.07% | 1262.8 | 2.97% | motif file (matrix) |
svg |
32 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-8 | -2.052e+01 | 0.0000 | 112.0 | 12.57% | 2945.5 | 6.93% | motif file (matrix) |
svg |
33 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-8 | -1.871e+01 | 0.0000 | 101.0 | 11.34% | 2647.6 | 6.23% | motif file (matrix) |
svg |
34 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-8 | -1.856e+01 | 0.0000 | 45.0 | 5.05% | 813.6 | 1.91% | motif file (matrix) |
svg |
35 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-7 | -1.657e+01 | 0.0000 | 47.0 | 5.27% | 932.1 | 2.19% | motif file (matrix) |
svg |
36 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-6 | -1.607e+01 | 0.0000 | 48.0 | 5.39% | 979.9 | 2.30% | motif file (matrix) |
svg |
37 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-6 | -1.570e+01 | 0.0000 | 92.0 | 10.33% | 2489.3 | 5.86% | motif file (matrix) |
svg |
38 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.521e+01 | 0.0000 | 91.0 | 10.21% | 2481.3 | 5.84% | motif file (matrix) |
svg |
39 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.423e+01 | 0.0000 | 54.0 | 6.06% | 1240.8 | 2.92% | motif file (matrix) |
svg |
40 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-6 | -1.400e+01 | 0.0000 | 56.0 | 6.29% | 1316.4 | 3.10% | motif file (matrix) |
svg |
41 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-6 | -1.388e+01 | 0.0000 | 51.0 | 5.72% | 1157.0 | 2.72% | motif file (matrix) |
svg |
42 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-5 | -1.309e+01 | 0.0000 | 49.0 | 5.50% | 1123.9 | 2.64% | motif file (matrix) |
svg |
43 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-5 | -1.289e+01 | 0.0000 | 89.0 | 9.99% | 2550.9 | 6.00% | motif file (matrix) |
svg |
44 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.267e+01 | 0.0000 | 62.0 | 6.96% | 1584.6 | 3.73% | motif file (matrix) |
svg |
45 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-5 | -1.230e+01 | 0.0000 | 36.0 | 4.04% | 738.5 | 1.74% | motif file (matrix) |
svg |
46 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-5 | -1.219e+01 | 0.0000 | 37.0 | 4.15% | 773.9 | 1.82% | motif file (matrix) |
svg |
47 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-5 | -1.207e+01 | 0.0000 | 117.0 | 13.13% | 3687.8 | 8.67% | motif file (matrix) |
svg |
48 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-5 | -1.189e+01 | 0.0001 | 19.0 | 2.13% | 269.9 | 0.63% | motif file (matrix) |
svg |
49 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-5 | -1.175e+01 | 0.0001 | 99.0 | 11.11% | 3010.7 | 7.08% | motif file (matrix) |
svg |
50 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 49.0 | 5.50% | 1190.2 | 2.80% | motif file (matrix) |
svg |
51 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-4 | -1.147e+01 | 0.0001 | 17.0 | 1.91% | 228.4 | 0.54% | motif file (matrix) |
svg |
52 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-4 | -1.078e+01 | 0.0001 | 43.0 | 4.83% | 1023.3 | 2.41% | motif file (matrix) |
svg |
53 |
| Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.999e+00 | 0.0003 | 170.0 | 19.08% | 6062.8 | 14.26% | motif file (matrix) |
svg |
54 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-4 | -9.711e+00 | 0.0004 | 112.0 | 12.57% | 3693.0 | 8.69% | motif file (matrix) |
svg |
55 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -9.606e+00 | 0.0004 | 18.0 | 2.02% | 292.8 | 0.69% | motif file (matrix) |
svg |
56 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-4 | -9.448e+00 | 0.0005 | 35.0 | 3.93% | 815.6 | 1.92% | motif file (matrix) |
svg |
57 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.344e+00 | 0.0006 | 45.0 | 5.05% | 1161.2 | 2.73% | motif file (matrix) |
svg |
58 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-3 | -9.147e+00 | 0.0007 | 98.0 | 11.00% | 3183.2 | 7.49% | motif file (matrix) |
svg |
59 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-3 | -8.444e+00 | 0.0013 | 64.0 | 7.18% | 1913.2 | 4.50% | motif file (matrix) |
svg |
60 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-3 | -8.215e+00 | 0.0016 | 117.0 | 13.13% | 4046.4 | 9.52% | motif file (matrix) |
svg |
61 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -7.708e+00 | 0.0027 | 68.0 | 7.63% | 2123.3 | 4.99% | motif file (matrix) |
svg |
62 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-3 | -7.389e+00 | 0.0036 | 18.0 | 2.02% | 352.9 | 0.83% | motif file (matrix) |
svg |
63 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -7.161e+00 | 0.0045 | 49.0 | 5.50% | 1437.8 | 3.38% | motif file (matrix) |
svg |
64 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-3 | -7.113e+00 | 0.0046 | 12.0 | 1.35% | 189.8 | 0.45% | motif file (matrix) |
svg |
65 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-3 | -7.092e+00 | 0.0047 | 23.0 | 2.58% | 519.6 | 1.22% | motif file (matrix) |
svg |
66 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.749e+00 | 0.0065 | 23.0 | 2.58% | 533.5 | 1.25% | motif file (matrix) |
svg |
67 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.425e+00 | 0.0088 | 27.0 | 3.03% | 683.7 | 1.61% | motif file (matrix) |
svg |
68 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -6.376e+00 | 0.0091 | 81.0 | 9.09% | 2763.7 | 6.50% | motif file (matrix) |
svg |
69 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-2 | -6.161e+00 | 0.0111 | 35.0 | 3.93% | 983.6 | 2.31% | motif file (matrix) |
svg |
70 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.572e+00 | 0.0198 | 14.0 | 1.57% | 289.7 | 0.68% | motif file (matrix) |
svg |
71 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -5.397e+00 | 0.0232 | 152.0 | 17.06% | 5911.6 | 13.90% | motif file (matrix) |
svg |
72 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -5.370e+00 | 0.0235 | 10.0 | 1.12% | 176.5 | 0.42% | motif file (matrix) |
svg |
73 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.181e+00 | 0.0280 | 197.0 | 22.11% | 7943.6 | 18.68% | motif file (matrix) |
svg |
74 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -5.040e+00 | 0.0318 | 27.0 | 3.03% | 759.4 | 1.79% | motif file (matrix) |
svg |
75 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.821e+00 | 0.0391 | 113.0 | 12.68% | 4305.8 | 10.13% | motif file (matrix) |
svg |
76 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-2 | -4.799e+00 | 0.0394 | 30.0 | 3.37% | 886.9 | 2.09% | motif file (matrix) |
svg |
77 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-2 | -4.703e+00 | 0.0429 | 20.0 | 2.24% | 526.0 | 1.24% | motif file (matrix) |
svg |
78 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-2 | -4.632e+00 | 0.0454 | 33.0 | 3.70% | 1012.2 | 2.38% | motif file (matrix) |
svg |
79 |
| PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.613e+00 | 0.0457 | 52.0 | 5.84% | 1765.0 | 4.15% | motif file (matrix) |
svg |