Information for 4-TRTTKACACA (Motif 2)

A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
Reverse Opposite:
C G A T T C A G G C A T T C A G A G C T G T C A C T G A C G T A A G C T C G T A
p-value:1e-37
log p-value:-8.589e+01
Information Content per bp:1.691
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif9.37%
Number of Background Sequences with motif679.5
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets44.2 +/- 25.6bp
Average Position of motif in Background49.8 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXC1/MA0032.2/Jaspar

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TRTTKACACA
ATATTTACATA
 A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---TRTTKACACA--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TRTTKACACA
ATATTTACATA
 A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TRTTKACACA--
TGTTTACTTAGG
 A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--TRTTKACACA
CNTGTTTACATA
 A C G T A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TRTTKACACA
TRTTTACTTW
 A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----TRTTKACACA-
TCCATGTTTACTTTG
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TRTTKACACA
TTTGTTTACTTA
 A C G T A C G T A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TRTTKACACA
TGTTTACTTT
 A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TRTTKACACA
TGTTTACTTT
 A C G T C T G A A C G T A G C T C A G T T C G A A G T C C G T A A G T C C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T