Information for 10-CCACTTAGGAAGG (Motif 10)

A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A G T C A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C T G
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 27.1bp
Average Position of motif in Background46.5 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTAGGAAGG
CTTAACCACTTAAGGAT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGAAGG
ACCACTTAA-----
 A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGAAGG
ACCACTTAA-----
 A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTAGGAAGG
CATAACCACTTAACAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCACTTAGGAAGG
GCACTTAA-----
 A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGAAGG
ACCACTTGAA----
 A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACTTAGGAAGG
MRSCACTYAA-----
 A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCACTTAGGAAGG
BCMATTAG-----
 A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCACTTAGGAAGG
NNCAATTANN----
 A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACTTAGGAAGG
TAAGCCACTTAACATT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C T G A C T G
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T A C G T