Information for 10-GCAGTCTGCYAGATGC (Motif 11)

A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
Reverse Opposite:
T A C G A G T C C G T A A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C G T A A G T C C G A T A C T G A G T C
p-value:1e-7
log p-value:-1.733e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.2 +/- 25.7bp
Average Position of motif in Background45.3 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAGTCTGCYAGATGC
VBSYGTCTGG-------
 A C G T A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCAGTCTGCYAGATGC
-CTGTCTGG-------
 A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCAGTCTGCYAGATGC
TGGCAGNCTGCCAG----
 A C G T A C G T A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGTCTGCYAGATGC
-CTGTCTGTCACCT--
 A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAGTCTGCYAGATGC
--TGTCTGDCACCT--
 A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGTCTGCYAGATGC
-TWGTCTGV-------
 A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAGTCTGCYAGATGC
CTTGGCANNNTGCCAA----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCAGTCTGCYAGATGC
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCAGTCTGCYAGATGC
TTGGCATGGTGCCA-----
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GCAGTCTGCYAGATGC
--GGTCTGGCAT----
 A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G C T G T C A A T C G G T C A C G A T A C T G A G T C
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T