Information for 5-GCGMSGWGCSATK (Motif 3)

A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
Reverse Opposite:
G T C A C G T A A C G T A T C G A C T G A G T C C G A T A T G C A T C G A C T G A G T C A C T G A G T C
p-value:1e-13
log p-value:-3.117e+01
Information Content per bp:1.836
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.2 +/- 17.2bp
Average Position of motif in Background71.6 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCGMSGWGCSATK
TTGGCATGGTGCCA--
 A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGMSGWGCSATK
GCCGCGCAGTGCGT--
 A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------GCGMSGWGCSATK
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCGMSGWGCSATK
RGKGGGCGGAGC----
 A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCGMSGWGCSATK
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCGMSGWGCSATK
GGGGGCGGGGCC---
 A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCGMSGWGCSATK
---CGGAGC----
 A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------GCGMSGWGCSATK
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCGMSGWGCSATK
----CGTGCCAAG
 A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCGMSGWGCSATK---
------GGCCATTAAC
 A C T G A G T C A C T G G T A C T A G C A T C G C G T A A C T G A G T C A T G C C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C