Information for 11-GGCACTGTTTTGT (Motif 12)

A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A G T C A C G T A C G T A A G T C C T G A A T C G C G A T A T C G A T G C G T A C
p-value:1e-9
log p-value:-2.123e+01
Information Content per bp:1.838
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.3 +/- 17.3bp
Average Position of motif in Background54.2 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGCACTGTTTTGT----
NNCTTTGTTTTGNTNNN
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCACTGTTTTGT
NNGTANTGTTTTNC
 A C G T A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCACTGTTTTGT
GCNGCCATCTTG-
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCACTGTTTTGT-----
---ANATTTTTGCAANTN
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCACTGTTTTGT------
---ANTCCTTTGTCTNNNN
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCACTGTTTTGT---
-NNNCCATTGTGTNAN
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGCACTGTTTTGT---
NNTTTTGTTTTGATNT
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCACTGTTTTGT------
--TNNTCCTTTGTTCTNNT
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCACTGTTTTGT
-GCAGTGATTT--
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGCACTGTTTTGT---
------CCTTTGTTTT
 A C T G A T C G A T G C C G T A A T G C A G C T C T A G A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T