Information for 4-CAAATTAGCC (Motif 9)

G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
Reverse Opposite:
C T A G C A T G G A T C C G A T C T G A G T C A G A C T C A G T C A G T C T A G
p-value:1e-12
log p-value:-2.793e+01
Information Content per bp:1.660
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.97%
Number of Background Sequences with motif745.9
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets47.2 +/- 21.1bp
Average Position of motif in Background50.9 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NOTO/MA0710.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAGCC
GCTAATTAGC-
 A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C A C G T

PAX4/MA0068.2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAAATTAGCC
CTAATTAG--
 G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCC---
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

GBX1/MA0889.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAGCC
ACTAATTAGC-
 A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCC---
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0131.1_Pax4/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCC---
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C A C G T A C G T A C G T
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAAATTAGCC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

Dlx1/MA0879.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAATTAGCC
CCTAATTATC-
 A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T

PH0032.1_Evx2/Jaspar

Match Rank:9
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CAAATTAGCC---
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

HESX1/MA0894.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAAATTAGCC
NCCAATTANC-
 A C G T G A T C G T C A G T C A C T G A C A G T G A C T C G T A C T A G G T A C G A T C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T