Information for 3-GTCAGGCGTTGAC (Motif 5)

A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
Reverse Opposite:
A T C G A C G T A G T C C G T A C G T A T G A C A C T G A G T C A G T C A C G T A C T G C T G A A G T C
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 22.9bp
Average Position of motif in Background48.5 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCGTTGAC--
GCGGAGGTGTCGCCTC
 A C G T A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GTCAGGCGTTGAC---
----GGTGYTGACAGS
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCAGGCGTTGAC
---AGGCCTNG--
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCAGGCGTTGAC
---TGACCTTGAN
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTCAGGCGTTGAC---
--CAGGCCNNGGCCNN
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTCAGGCGTTGAC--
---TGACCTTGACCT
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGGCGTTGAC
AANTCATGCGTGAA-
 A C G T A C G T A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTCAGGCGTTGAC---
-GCTGACCTTGAACTN
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C A C G T A C G T A C G T
A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCGTTGAC
TGTCAGGGGGCG--
 A C G T A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GTCAGGCGTTGAC
---AGGCCTAG--
 A C T G A G C T A G T C C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C T G G T C A A T G C
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T