Information for 20-TTAGTCGTAGTTC (Motif 13)

A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
Reverse Opposite:
A C T G C G T A C T G A A G T C A G C T C G T A A G T C A C T G C G T A G A T C A C G T C G T A C G T A
p-value:1e-14
log p-value:-3.406e+01
Information Content per bp:1.932
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.6 +/- 25.3bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTCGTAGTTC
GNNATTTGTCGTAANN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTCGTAGTTC
NNAATTAGTCACGGT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTAGTCGTAGTTC
NTTATTCGTCATNC
 A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TTAGTCGTAGTTC
CCTTAATNGNTTTT-
 A C G T A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-TTAGTCGTAGTTC
ATGAGTCAT-----
 A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:forward strand
Alignment:TTAGTCGTAGTTC-
----YCTTTGTTCC
 A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TTAGTCGTAGTTC-
CAAAGGCGTGGCCAG
 A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:TTAGTCGTAGTTC----
NNNTCCTTTGTTCTNNN
 A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.48
Offset:2
Orientation:forward strand
Alignment:TTAGTCGTAGTTC
--AGTCGTAAAAA
 A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C
A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PB0131.1_Gmeb1_2/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--TTAGTCGTAGTTC-
TGGGCGACGTCGTTAA
 A C G T A C G T A C G T A C G T C G T A C A T G A C G T G T A C A C T G A C G T C T G A A C T G A G C T A C G T A G T C A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A