Information for 19-TCTGGCATAATAA (Motif 29)

A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
Reverse Opposite:
A C G T C A G T G T C A G A C T A G C T T C G A C G A T A T C G A T G C A G T C C G T A A C T G T C G A
p-value:1e-8
log p-value:-1.968e+01
Information Content per bp:1.719
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif43.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets47.4 +/- 21.0bp
Average Position of motif in Background49.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCATAATAA
GGTCTGGCAT-----
 A C G T A C G T A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCTGGCATAATAA
GGTTGGCAT-----
 A C G T A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCTGGCATAATAA
NGTGGGCAT-----
 A C G T A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCTGGCATAATAA
NTTGGCANN----
 A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTGGCATAATAA
CTTGGCAA-----
 A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCTGGCATAATAA
-TTGGCA------
 A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCTGGCATAATAA
GTCCGCCATTA---
 A C G T A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TCTGGCATAATAA
NGTAGGTTGGCATNNN--
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCTGGCATAATAA----
-TTGAGTTAATTAACCT
 A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCTGGCATAATAA----
-TTGAGTTAATTAACCT
 A G C T A G T C G A C T A C T G A T C G A T G C C G T A A C G T T C G A C G T A C A G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T