Information for 3-CGGGCTATAYAAG (Motif 6)

A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G
Reverse Opposite:
A G T C A G C T G A C T T C G A C G A T C G T A C G A T T G C A A C T G A G T C G T A C A G T C A T C G
p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.701
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.0 +/- 22.3bp
Average Position of motif in Background51.2 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CGGGCTATAYAAG-
--GNCTATAAAAGG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGGGCTATAYAAG------
----GTATAAAAGGCGGGG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGGGCTATAYAAG------
----GTATAAAAGGCGGGG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGGGCTATAYAAG-
--TNCCATATATGG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T
A C G T A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGGGCTATAYAAG
-AAGCCATAAAA-
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

SRF/MA0083.3/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGGGCTATAYAAG----
-TGACCATATATGGTCA
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CGGGCTATAYAAG-
------AGATAAGA
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGGGCTATAYAAG---
AGAGCCATAAAATTCG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

MF0008.1_MADS_class/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGGGCTATAYAAG-
----CCATATATGG
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T
A C G T A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CGGGCTATAYAAG--
-----CAGATAAGGN
 A T G C T C A G A C T G T C A G A G T C A C G T C G T A C G A T C G T A A G C T C G T A C T G A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A