Information for 3-ATGGTHACTTTCC (Motif 4)

C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
Reverse Opposite:
A C T G C T A G G T C A C G T A C T G A A C T G C G A T C T A G G T C A A T G C A G T C C T G A A C G T
p-value:1e-17
log p-value:-4.051e+01
Information Content per bp:1.732
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.98%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.7 +/- 17.9bp
Average Position of motif in Background40.0 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:ATGGTHACTTTCC--
----NNACTTGCCTT
 C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---ATGGTHACTTTCC-
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C A C G T
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

FOXD1/MA0031.1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ATGGTHACTTTCC
ATGTTTAC-----
 C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----ATGGTHACTTTCC
TCTCAAAGGTCACCTG--
 A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------ATGGTHACTTTCC
CGTTGCCATGGCAACG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----ATGGTHACTTTCC
TAAAAATGCTGACTT---
 A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ATGGTHACTTTCC
AAGGTCAC-----
 C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGTHACTTTCC
TTGCCATGGCAACC----
 A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T A C G T

PB0045.1_Myb_1/Jaspar

Match Rank:9
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------ATGGTHACTTTCC
NNNNTAACGGTTNNNAN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
G C T A C T G A C G T A C G T A G A C T C T G A C G T A A G T C A T C G C A T G G A C T G A C T C A G T G T A C G T A C G C T A C G A T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--ATGGTHACTTTCC
TCAAGGTCAN-----
 A C G T A C G T C G T A A G C T A C T G A T C G A C G T G A T C C G T A A G T C A G C T C G A T A C G T A G T C G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T