Information for 7-GCAGRCAGRCAGGCAG (Motif 23)

C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
Reverse Opposite:
A G T C A G C T A C T G A G T C A G T C A G C T A T C G A G T C G T A C A C G T A T C G A G T C G T A C A C G T T A C G A G T C
p-value:1e-6
log p-value:-1.388e+01
Information Content per bp:1.699
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif32.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.0 +/- 35.8bp
Average Position of motif in Background47.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGRCAGRCAGGCAG-
GGAAGGAAGGAAGGAAGG
 A C G T C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
--TGGCAGNCTGCCAG
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
SCAGYCADGCATGAC-
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
TCAGNGAGCGTGAC--
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
---AGGTGNCAGACAG
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
--------CCAGACAG
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
CCAGACRSVB------
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG-
-TTGGCANNNTGCCAAG
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G A C G T
A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG----
YCAGGCWCAGTACCAGGCTC
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GCAGRCAGRCAGGCAG
-------TNNGGGCAG
 C T A G A G T C C G T A A C T G C T A G T A G C G T C A A C T G C T A G T A G C T C G A A C T G T C A G G T A C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G