Information for 2-GTCTATAAAA (Motif 2)

A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
G A C T G C A T A C G T A C G T T C G A A G C T C T G A T C A G T G C A T G A C
p-value:1e-24
log p-value:-5.739e+01
Information Content per bp:1.708
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif10.21%
Number of Background Sequences with motif186.6
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets51.4 +/- 13.6bp
Average Position of motif in Background54.3 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GTCTATAAAA-------
--GTATAAAAGGCGGGG
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GTCTATAAAA-------
--GTATAAAAGGCGGGG
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTCTATAAAA
AAGCCATAAAA
 A C G T A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GTCTATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTCTATAAAA--
NGYCATAAAWCH
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GTCTATAAAA
-GCAATAAAA
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTCTATAAAA--
GNCTATAAAAGG
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GTCTATAAAA-
-CCAATAAAAA
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GTCTATAAAA
NCYAATAAAA
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GTCTATAAAA-
-GTCATAAAAN
 A C T G A C G T A G T C A G C T C T G A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T