Information for 6-VTCAYTASCT (Motif 11)

T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
Reverse Opposite:
C G T A C T A G A T G C G A C T C G T A C T G A A C G T A C T G C T G A A G T C
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.729
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif10.64%
Number of Background Sequences with motif911.7
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets40.0 +/- 24.8bp
Average Position of motif in Background50.2 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:VTCAYTASCT
-YCATTAMC-
 T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-VTCAYTASCT
GGTAATTAGC-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C A C G T

EVX1/MA0887.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-VTCAYTASCT
GGTAATTAGC-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-VTCAYTASCT
CCTAATTACC-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-VTCAYTASCT
ACTAATTAGC-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T

PDX1/MA0132.2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:VTCAYTASCT
GTAATTAG--
 T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T

EMX1/MA0612.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-VTCAYTASCT
NNTAATTAGN-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T C A G A T C G G A C T G T C A G C T A G C A T A G C T C T G A C T A G A C T G A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:VTCAYTASCT
-TCAGTCTT-
 T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

HOXB2/MA0902.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-VTCAYTASCT
AGTAATTAAC-
 A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T
T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----VTCAYTASCT---
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T T C A G A G C T A G T C C G T A G A C T A C G T C T G A A T C G A G T C C G A T A C G T A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A