Information for 1-SGCCSSSCYKTCTATA (Motif 1)

A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A
Reverse Opposite:
G A C T T G C A C G A T C T G A C A T G T C G A T G A C C T A G T A C G A T C G A T C G A T G C T A C G A T C G T A G C T A G C
p-value:1e-34
log p-value:-7.897e+01
Information Content per bp:1.544
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif12.34%
Number of Background Sequences with motif159.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets42.2 +/- 15.4bp
Average Position of motif in Background50.0 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA-
--NNNNNNCTTTTATAN
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T
A C G T A C G T A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA-
--NNNNNNCTTTTATAN
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T
A C G T A C G T A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PB0080.1_Tbp_1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:forward strand
Alignment:SGCCSSSCYKTCTATA------
------TCTTTATATATAAATA
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA------
-----ANNNGGATATATCCNNN
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:SGCCSSSCYKTCTATA---
-------CCTTTTATAGNC
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA------
------NCGTATTATAATCNTA
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA----
---NTCNTCCCCTATNNGNN
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA--
------CBTGTTTAYAWW
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA---
-------NTGTTTAYATWW
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

MEF2B/MA0660.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:SGCCSSSCYKTCTATA--
------GCTATTTATAGC
 A T C G A T C G T A G C A T G C T A C G T A G C T A G C A T G C G A T C A C T G A G C T G T A C A G C T G C T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C