Information for 11-GAACTSTRGSTGA (Motif 21)

A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A T C G A G T C A G T C C G T A A T C G C G T A A C T G A C G T A C G T A G T C
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.884
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 27.8bp
Average Position of motif in Background51.5 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA::RXRA/MA0159.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAACTSTRGSTGA---
TGACCTCTCNNTGACCT
 A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T A C G T A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAACTSTRGSTGA---
TGACCTTTANTTGACCT
 A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T A C G T A C G T
G A C T C T A G T G C A T G A C A G T C G A C T A G C T G C A T T C G A A C T G C A G T A G C T A T C G C T G A G T A C A T G C A G C T

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAACTSTRGSTGA-
NNAATTCTCGNTNAN
 A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAACTSTRGSTGA---
BTGACCTCTNNHTGACCY
 A C G T A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T A C G T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAACTSTRGSTGA---
TGACCTTTGCATGACCT
 A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T A C G T A C G T
G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAACTSTRGSTGA
GAACAATGGN---
 A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAACTSTRGSTGA
GAACAATGG----
 A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAACTSTRGSTGA
GGGAATTGTAGT---
 A C G T A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAACTSTRGSTGA-
TATAAGTAGGTCAA
 A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GAACTSTRGSTGA-
ATGTACAGTAGCAAAG
 A C G T A C G T A C T G C G T A C G T A G T A C A C G T T A G C A C G T C T A G A C T G A T G C A C G T A C T G G T C A A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G