Information for 13-AAAATCGGCC (Motif 35)

G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G A G T C A G T C A T C G C G T A C G A T A C G T A C G T A C G T
p-value:1e-6
log p-value:-1.611e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif39.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets48.8 +/- 30.6bp
Average Position of motif in Background46.8 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAATCGGCC-
-AAYTAGGTCA
 G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AAAATCGGCC
CCAAAAATAG---
 A C G T A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AAAATCGGCC--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAAATCGGCC---
-----AGGCCTAG
 G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAATCGGCC--
TATAAGTAGGTCAA
 A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAAATCGGCC--
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAAATCGGCC
DCYAAAAATAGM--
 A C G T A C G T A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AAAATCGGCC
ATGCTAAAAATAGAA-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAAATCGGCC--
AAAACCGGTTTT
 G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAAATCGGCC--
CAAGATGGCGGC
 G T C A C G T A C G T A G C T A A C G T T A G C A C T G A C T G A G T C A G T C A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C