Information for 14-CCAATGGAGT (Motif 50)

A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.414e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.7 +/- 13.0bp
Average Position of motif in Background63.3 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCAATGGAGT
AGCCAATCGG--
 A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCAATGGAGT
VRAACAATGG---
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGGAGT
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAATGGAGT
GAACAATGG---
 A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGAGT
RACAAWGG---
 A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGAGT
AACAAAGG---
 A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATGGAGT--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGAGT------
NNNANTGCAGTGCNNTT
 A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAATGGAGT
GAACAATGGN--
 A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCAATGGAGT--
-TAATGGCGGNC
 A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C