Information for 21-CCTGCASGCAGACTMC (Motif 43)

A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
Reverse Opposite:
A C T G C A G T G C T A A C T G G A C T A G T C C A G T C T A G T A G C A T G C C G A T T A C G G T A C T G C A A C T G C T A G
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.686
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif25.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets38.4 +/- 20.1bp
Average Position of motif in Background54.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CCTGCASGCAGACTMC
-------BCAGACWA-
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCTGCASGCAGACTMC------
-----TACGAGACTCCTCTAAC
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CCTGCASGCAGACTMC-
-------CCAGACRSVB
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CCTGCASGCAGACTMC
-------CCAGACAG-
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCTGCASGCAGACTMC
--AGGTGHCAGACA--
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CCTGCASGCAGACTMC
----ATGCCAGACN--
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CCTGCASGCAGACTMC--
----CTGGCAGNCTGCCA
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:CCTGCASGCAGACTMC
--AGGTGNCAGACAG-
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.46
Offset:7
Orientation:forward strand
Alignment:CCTGCASGCAGACTMC-------
-------ACATGCTACCTAATAC
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.45
Offset:2
Orientation:forward strand
Alignment:CCTGCASGCAGACTMC---
--CAAATCCAGACATCACA
 A G T C T G A C A C G T C A T G A T G C G C T A T A C G A T C G G A T C G T C A A C T G C T G A T A G C C A G T G T C A A G T C A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A