Information for 6-AGGGGTTAAG (Motif 38)

C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
Reverse Opposite:
G T A C A C G T C G A T C G T A C G T A A G T C A G T C A T G C A G T C C G A T
p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.833
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif102.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets53.3 +/- 24.1bp
Average Position of motif in Background52.6 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGGGGTTAAG---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGGGGTTAAG---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----AGGGGTTAAG---
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGGGGTTAAG
AGGTGTTAAT
 C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGGGTTAAG
TAGGTGTGAAG
 A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGGGTTAAG
AGRGGTCA--
 C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGGGGTTAAG----
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGGGTTAAG
AAGGTGTKAA-
 A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGGGTTAAG
AAGGTGTGAAA
 A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGGGGTTAAG----
NANAGGGATTAATTATN
 A C G T A C G T A C G T C G T A C T A G T A C G C T A G A C T G A C G T G C A T C G T A G T C A C A T G A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C