Information for 2-CCGGCYTTGCCCAACA (Motif 3)

A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
Reverse Opposite:
C G A T A T C G A G C T A C G T A C T G C T A G C A T G A G T C G T C A G C T A C T G A A C T G A G T C A G T C A C T G T A C G
p-value:1e-12
log p-value:-2.927e+01
Information Content per bp:1.726
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.9 +/- 20.5bp
Average Position of motif in Background57.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGCYTTGCCCAACA
-AGGCCTAG-------
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGGCYTTGCCCAACA
-AGGCCTNG-------
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGGCYTTGCCCAACA
CAGGCCNNGGCCNN--
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGGCYTTGCCCAACA--
--GGGTGTGCCCAAAAGG
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCGGCYTTGCCCAACA
-TGACCTTGACCT---
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCGGCYTTGCCCAACA-
--GACCACGCCCTTATT
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A A C G T
A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCGGCYTTGCCCAACA
-TGACCTTGACCT---
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCGGCYTTGCCCAACA-
--TGCCTGCGYCMCCTT
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A A C G T
A C G T A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CCGGCYTTGCCCAACA
-----ATTGCGCAAC-
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CCGGCYTTGCCCAACA
-TGACCTTGAN-----
 A T G C T G A C A C T G A C T G A G T C G A C T C A G T C A G T A C T G G T A C A G T C G T A C T C G A C T G A A T G C C G T A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T