Information for 5-AAGGARAGGAGRGAAG (Motif 5)

C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
Reverse Opposite:
A G T C A G C T A C G T A G T C A G C T A G T C C G A T G A T C A T G C A C G T A G C T A C G T A G T C A G T C A C G T C G A T
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.809
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.5 +/- 15.3bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG
-----AAGGTGTGAA-
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGGARAGGAGRGAAG
GGAAGGAAGGAAGGAAGG
 A C G T A C G T C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG---
--GAAAAGGTGTGAAAATT
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG
-----TAGGTGTGAAG
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG-
------GGGCGGGAAGG
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG--
-----AAGGTGTGAAAAT
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG
------AGGTGTGAAA
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG
AAGGCAAGTGT-----
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AAGGARAGGAGRGAAG
-----AAGGTGTKAA-
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AAGGARAGGAGRGAAG-
-------CSTGGGAAAD
 C G T A C G T A A C T G A C T G G T C A C T G A C G T A A T C G C A T G C G T A A C T G C T G A A C T G C G T A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A