Information for 13-GCGTGAGTKGGCC (Motif 32)

A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
Reverse Opposite:
C A T G A C T G A G T C A G T C G T C A G T C A G T A C A C G T A G T C C T G A G T A C A C T G A T G C
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.810
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.5 +/- 25.0bp
Average Position of motif in Background53.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGTGAGTKGGCC
-CGTGGGTGGTCC
 A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCGTGAGTKGGCC
TGCGTG--------
 A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCGTGAGTKGGCC
-CTTGAGTGGCT-
 A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGAGTKGGCC
TTGCGTGCVA-----
 A C G T A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGTGAGTKGGCC
NCGTGACN-----
 A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTGAGTKGGCC--
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Mitf/MA0620.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGAGTKGGCC
NCACGTGACN-----
 A C G T A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GCGTGAGTKGGCC
NNNACCGAGAGTNNN--
 A C G T A C G T A C G T A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCGTGAGTKGGCC
NGCGTGGGCGGR--
 A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
A C G T T A C G G A T C A C T G A C G T C T A G A C T G A C T G G A T C C T A G C A T G C T A G A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGAGTKGGCC
GTGGCGTGACNG----
 A C G T A C G T A C G T A T C G A G T C A C T G A G C T A C T G C G T A A C T G A C G T A C G T A C T G T C A G A G T C G T A C
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T A C G T A C G T