Information for 9-ACGTAATACAAGG (Motif 22)

C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
Reverse Opposite:
A T G C A G T C C G A T A G C T A T C G A C G T C G T A A C G T C A G T C G T A A T G C A C T G A C G T
p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.715
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.0 +/- 13.5bp
Average Position of motif in Background48.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crem/MA0609.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACGTAATACAAGG
TTACGTCATN-----
 A C G T A C G T C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ACGTAATACAAGG
--GTCATAAAAN-
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACGTAATACAAGG
-CCYMATAAAA--
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACGTAATACAAGG
--GCAATAAAA--
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACGTAATACAAGG--
TAGGTAATAAAATTCA
 A C G T C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACGTAATACAAGG
--CCAATAAAAA-
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ACGTAATACAAGG
AAGCCATAAAA--
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACGTAATACAAGG--
AACCCAATAAAATTCG
 A C G T C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACGTAATACAAGG
-NCYAATAAAA--
 C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

GMEB2/MA0862.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ACGTAATACAAGG
TTACGTAA-------
 A C G T A C G T C G T A T G A C T A C G G A C T G C T A C G T A C G A T T C G A A T G C C T G A C G T A C T A G A T C G
A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T